Package: GLMMadaptive 0.9-5

GLMMadaptive: Generalized Linear Mixed Models using Adaptive Gaussian Quadrature

Fits generalized linear mixed models for a single grouping factor under maximum likelihood approximating the integrals over the random effects with an adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995) <doi:10.1080/10618600.1995.10474663>.

Authors:Dimitris Rizopoulos [aut, cre]

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GLMMadaptive.pdf |GLMMadaptive.html✨
GLMMadaptive/json (API)
NEWS

# Install 'GLMMadaptive' in R:
install.packages('GLMMadaptive', repos = c('https://drizopoulos.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/drizopoulos/glmmadaptive/issues

On CRAN:

generalized-linear-mixed-modelsmixed-effects-modelsmixed-models

9.85 score 60 stars 3 packages 200 scripts 3.3k downloads 14 mentions 36 exports 4 dependencies

Last updated 5 months agofrom:df2d6c2b75. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 15 2024
R-4.5-winOKOct 15 2024
R-4.5-linuxOKOct 15 2024
R-4.4-winOKOct 15 2024
R-4.4-macOKOct 15 2024
R-4.3-winOKOct 15 2024
R-4.3-macOKOct 15 2024

Exports:anovabeta.binomialbeta.famcensored.normalcoefconfintcooks.distancecr_marg_probscr_setupeffectPlotDatafittedfixefformulaGamma.famhurdle.beta.famhurdle.lognormalhurdle.negative.binomialhurdle.poissonmarginal_coefsmixed_modelmodel.framemodel.matrixnegative.binomialnobspredictranefresidualsscoring_rulessimulatestudents.ttermsunit.lindleyVIFzi.binomialzi.negative.binomialzi.poisson

Dependencies:latticeMASSmatrixStatsnlme

GLMMadaptive Basics

Dimitris Rizopoulos

Rendered fromGLMMadaptive.Rmdusingknitr::rmarkdownon Oct 15 2024.

Last update: 2021-01-25
Started: 2021-01-25

Readme and manuals

Help Manual

Help pageTopics
Functions to Set-Up Data for a Continuation Ratio Mixed Modelcr_marg_probs cr_setup
Predicted Values for Effects PlotseffectPlotData effectPlotData.MixMod
Family functions for Student's-t, Beta, Zero-Inflated and Hurdle Poisson and Negative Binomial, Hurdle Log-Normal, Hurdle Beta, Gamma, and Censored Normal Mixed Modelsbeta.binomial beta.fam censored.normal Gamma.fam hurdle.beta.fam hurdle.lognormal hurdle.negative.binomial hurdle.poisson students.t unit.lindley zi.binomial zi.negative.binomial zi.poisson
Generalized Linear Mixed Models using Adaptive Gaussian QuadratureGLMMadaptive-package GLMMadaptive
Marginal Coefficients from Generalized Linear Mixed Modelsmarginal_coefs marginal_coefs.MixMod
Generalized Linear Mixed Effects Modelsmixed_model
Various Methods for Standard Genericsanova anova.MixMod coef coef.MixMod confint confint.MixMod cooks.distance cooks.distance.MixMod fitted fitted.MixMod fixef fixef.MixMod formula formula.MixMod methods.MixMod model.frame model.frame.MixMod model.matrix model.matrix.MixMod nobs nobs.MixMod predict predict.MixMod ranef ranef.MixMod residuals residuals.MixMod simulate simulate.MixMod terms terms.MixMod VIF VIF.MixMod
Family function for Negative Binomial Mixed Modelsnegative.binomial
Proper Scoring Rules for Categorical Datascoring_rules